Calculates the elution profile similarity between SOIs.
SOIsim(struct, id, subset = NA, mode = "all") # S4 method for RHermesExp,numeric SOIsim(struct, id, subset = NA, mode = "all")
| struct | The RHermesExp object. |
|---|---|
| id | The SOI list to be used. |
| subset | A subset of SOI list entries that you want to compare the profile similarities with. Defaults to NA, which means all the entries. |
| mode | Whether to compare the similarity with "all" other SOIs or only with those determined by subset. Defaults to "all", any other value restricts the comparison to the subset. |
A similarity matrix.
Roger Gine
if(FALSE){ myHermes <- SOIsim(myHermes, 2) #Remove the 2nd SOI list in the object }