Function reference • RHermes

Processing functions Needed in the RHermes workflow
`setExpParam()`	setExpParam
`setDB()`	setDB
`processMS1()`	processMS1
`findSOI()`	findSOI
`filterSOI()`	filterSOI
`removeISF()`	removeISF
`generateIL()`	generateIL
`filterIL()`	filterIL
`processMS2()`	processMS2
Getters Access to the RHermesExp subobjects
`adlist()`	adlist
`DB()`	DB
`PL()`	PL
`SOI()`	SOI
`IL()`	IL
`MS2Data()`	MS2Data
`Ident()`	Ident
Exporting functions Export your IL and MS2 spectras
`exportIL()`	exportIL
`exportMGF()`	exportMGF
`exportMSP()`	exportMSP
`exportmzML()`	exportmzML
`exportSIRIUS()`	exportSIRIUS
Plotting functions Bring your data alive
`plotPL()`	plotPL
`plotSOI()`	plotSOI
`plotFidelity()`	plotFidelity
`plotISF()`	plotISF
`plotIL()`	plotIL
`plotSS()`	plotSS
`plotRawMS2()`	plotRawMS2
Accessory functions Getting the job done
`addAd()`	addAd
`remAd()`	remAd
`readTime()`	readTime
`setTime()`	setTime
`SOIsim()`	SOIsim
`ssNetwork()`	ssNetwork
`setCluster()`	setCluster

Reference