plotPL

Source: R/Plot_functions.R

Plots the raw data points anotated with a given formula and adducts.

plotPL(
  struct,
  id,
  formula,
  ads = NA,
  rtrange = c(0, 10000),
  dynamicaxis = TRUE
)

# S4 method for RHermesExp,numeric,character
plotPL(
  struct,
  id,
  formula,
  ads = NA,
  rtrange = c(0, 10000),
  dynamicaxis = TRUE
)

Arguments

struct

An RHermesExp object
id

Number of the file to plot
formula

Formula annotation to search for (eg. "C6H12O6")
ads

Adducts to plot. Defaults to NA, which plots all of them by default.
rtrange

The retention time interval to plot, in seconds (eg. c(0,1000)). Defaults to a 0-10000s interval, which will cover all points.
dynamicaxis

Whether to use a fixed y scale for all adducts or to adapt the scale according to each adduct intensity

Value

An interactive plot_ly object

See also

Other Plots: plotCoverage(), plotIL(), plotISF()

Author

Roger Gine

Examples

struct <- readRDS(system.file("extdata", "exampleObject.rds",
                             package = "RHermes"))
p <- plotPL(struct, 1, "C5H11NO2", c("M+H", "M+Na", "M+K"), c(80, 120))