Generates a similarity matrix between different MS2 spectra.
ssNetwork(struct, id, ss)
| struct | An RHermesExp object |
|---|---|
| id | The id of the RHermesMS2Exp object. |
| ss | The MS2 spectra from Ident() to be compared |
A square symmetrical similarity matrix
Roger Gine
struct <- readRDS(system.file("extdata", "exampleObject.rds", package = "RHermes")) ssNetwork(struct, 1, 1:7)#> [,1] [,2] [,3] [,4] [,5] #> [1,] 1.0000000000000 0.99693647936 0.002400713286 0.0004778292797 0.00000000000 #> [2,] 0.9969364793584 1.00000000000 0.000000000000 0.0000000000000 0.02654399745 #> [3,] 0.0024007132865 0.00000000000 1.000000000000 0.9695667949088 0.05727347807 #> [4,] 0.0004778292797 0.00000000000 0.969566794909 1.0000000000000 0.00000000000 #> [5,] 0.0000000000000 0.02654399745 0.057273478069 0.0000000000000 1.00000000000 #> [6,] 0.0000000000000 0.00000000000 0.962630295797 0.9983896919343 0.00000000000 #> [7,] 0.9992103428179 0.99750782459 0.000000000000 0.0005387211360 0.00000000000 #> [,6] [,7] #> [1,] 0.0000000000 0.999210342818 #> [2,] 0.0000000000 0.997507824590 #> [3,] 0.9626302958 0.000000000000 #> [4,] 0.9983896919 0.000538721136 #> [5,] 0.0000000000 0.000000000000 #> [6,] 1.0000000000 0.000000000000 #> [7,] 0.0000000000 1.000000000000